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Science
17 March 2025

Phosphorylation Drives Nuclear Export Of Transcription Factor Pho4

Researchers unravel the complex mechanisms facilitating gene expression regulation through nuclear transport.

The regulation of gene expression is intricately linked to the transport of signaling proteins such as the phosphate-sensing transcription factor Pho4, which plays a pivotal role when cells respond to environmental stimuli. A recent study elucidates the complex mechanism by which phosphorylation of Pho4 drives its nuclear export, mediated by the exportin Msn5. This research provides valuable insight not only for the biology of yeast but also offers broader relevance to cellular signaling pathways across various organisms.

Understanding how proteins are localized within the cell is fundamental to grasping the control of gene expression. Proteins are dynamically translocated between the cytoplasm and nucleus, with phosphorylation acting as a key regulatory modification influencing their transport. Specifically, the transcription factor Pho4 requires phosphorylation for its binding to the Msn5 transport receptor, which facilitates its export from the nucleus. Until now, the mechanism by which this interaction occurred remained largely unexplored.

Employing advanced cryogenic electron microscopy (cryo-EM), the researchers detailed the structure of the Msn5-Pho4 complex. The study highlights how the phosphorylated version of Pho4 employs its nuclear export signal (NES) to interact with Msn5. This newly identified 35-residue NES, which binds to Msn5 through specific phosphorylated serines, differentiates itself from classical NES, marking it as part of a novel class of export signals.

The detailed observations gathered from high-resolution structures revealed the precise residues of Pho4 responsible for binding to Msn5. According to the authors, "This study not only identifies a non-classical NES class for Msn5 distinct from the cNES recognized by XPO1 but also elucidates how a phosphorylated cargo is recognized for nuclear export." This marks significant progress in our comprehension of how phosphate-dependent mechanisms govern nuclear transport processes.

The functionality of Msn5 as an export receptor highlights its role not only as a facilitator of Pho4 export but also as part of larger cellular signaling pathways. Proteins exported by Msn5 comprise key components involved in diverse cellular processes, from nutrient response to stress management. Understanding the binding dynamics enhances our overall view of cellular adaptations prompted by external stimuli.

The interplay between phosphorylation and Msn5-mediated transport is underscored by the necessity of specific phosphorylation sites on Pho4, particularly serines pS114 and pS128. The researchers found these phosphorylated residues play significant roles, with mutations leading to reduced binding affinity; as stated by the authors, "These findings advance our knowledge of the diversity of signals driving nuclear export and how cargo phosphorylation is key to regulating nuclear transport and cellular signaling pathways."

The identification of how phosphorylation influences Msn5 recognition of Pho4 lays the groundwork for potential future research. It invites exploration of other cellular signaling proteins utilizing similar mechanisms and expands our comprehension of post-translational modification roles within nuclear transport contexts.

Through their findings, the researchers establish the Pho4 phosphorylation status as central to its recognition by Msn5. The structural insights they provide herald not only new understandings of the cellular export pathways but also pose questions about the broader applications of their findings across different biological systems. Overall, the work marks important progress toward deciphering the complex regulatory networks dictated by protein localization.

Moving forward, investigations may focus on detailed studies of other candidate proteins involved with Msn5 and the factors influencing their phosphorylation. Such studies could unearth additional layers of regulation underpinning cellular behavior with far-reaching consequences for both fundamental science and therapeutic applications.