For nearly two centuries, scientists puzzled over a towering fossil unearthed in the Scottish countryside—a fossil so strange, so utterly unlike anything alive today, that it defied all attempts at classification. Now, after years of debate and speculation, a team of researchers from the University of Edinburgh and National Museums Scotland has finally cracked the case. Their verdict: Prototaxites, the mysterious 26-foot-tall organism that once dominated ancient landscapes, was neither plant nor fungus. Instead, it belonged to a completely extinct branch of life, one that has left no modern descendants and no close relatives.
The story of Prototaxites begins in 1843, when the first specimen was collected from the Rhynie chert, a unique 407-million-year-old rock formation in Aberdeenshire, Scotland. This site, often described as a time capsule of early land life, preserves in exquisite detail the remains of organisms from the Devonian period—a time when Earth’s land was just beginning to green with primitive plants and the earliest animals were taking their first tentative steps out of the water. According to Science Advances, Prototaxites stood nearly 8 meters tall, making it the largest known organism on land for millions of years. It towered over the fledgling flora, its trunk-like form dominating the sparse Devonian landscape.
For decades, scientists struggled to place Prototaxites within the tree of life. At first, Canadian scientist J. W. Dawson suggested it might be a rotting conifer, while others posited it was a giant fungus or even an ancient alga. But none of these labels quite fit. The organism lacked the leafy canopy and photosynthetic tissues of plants, the mycelial networks and nutrient-absorbing filaments of fungi, and the cellular architecture of algae. It was, as Sandy Hetherington, research associate at National Museums Scotland, put it: "They are life, but not as we now know it, displaying anatomical and chemical characteristics distinct from fungal or plant life, and therefore belonging to an entirely extinct evolutionary branch of life."
The breakthrough came when researchers applied a battery of modern techniques to new and old specimens. They sliced samples into wafer-thin sections, peered through microscopes, and built 3D reconstructions of Prototaxites’ internal architecture. What they found was astonishing: three distinct types of tubes woven together in a pattern unlike anything seen in living or extinct fungi. Most striking were the Type 3 tubes, with their ring-like annular thickenings—a structural feature that, according to the team, appears in no known fungus, past or present.
But anatomy can be misleading. Sometimes, unrelated organisms evolve similar shapes by sheer coincidence. To settle the matter, the team turned to chemistry. They ground up pristine fragments of Prototaxites and bombarded them with infrared light, searching for the molecular fingerprints that betray an organism’s true identity. Fungi, for example, are rich in chitin; plants are defined by lignin. Yet Prototaxites’ chemical signature was different. It showed aliphatic chains, aromatic compounds, and phenolic structures that were reminiscent of lignin but fundamentally distinct from anything alive today.
To be sure, the researchers ran their results through machine learning models trained on the spectral data of known organisms. The verdict was unambiguous: Prototaxites did not cluster with fungi or plants. In fact, the models achieved a 91% discrimination accuracy from its supposed closest relatives, and a 93% accuracy when tested against all chitinous organisms (fungi and arthropods included). As Alexander Hetherington, who coordinated the study, explained, "This is where it gets interesting."
The team also searched for perylene, a molecular biomarker unique to ascomycete fungi. They found it in abundance in the surrounding sediment and in other fossils from the same ecosystem—but not in Prototaxites itself. The complete absence of this marker, alongside the anatomical and chemical evidence, ruled out any possibility that Prototaxites was a fungus. Nor was it a plant, lacking both the isotopic signatures of photosynthesis and any sign of reproductive structures or symbiotic relationships.
The conclusion, published in Science Advances on January 21, 2026, was both thrilling and unsettling: Prototaxites belonged to a lineage that has vanished completely from Earth, leaving behind only fossilized remnants and a host of new questions. As Laura Cooper, a doctoral student at the University of Edinburgh and study co-author, put it, "Prototaxites therefore represents an independent experiment that life made in building large, complex organisms, which we can only know about through exceptionally preserved fossils."
What, then, was Prototaxites doing in those ancient landscapes? The evidence suggests it was feeding on decaying matter, breaking down the earliest forests that were just beginning to take hold. For millions of years, it may have played a crucial role in recycling nutrients and shaping the ecosystems of the Devonian world. Yet, as new forms of life evolved and diversified, Prototaxites and its kind disappeared, leaving no trace in the modern biosphere.
The Rhynie chert, with its unparalleled preservation, allowed scientists to study the structure and molecular makeup of Prototaxites in unprecedented detail. Earlier researchers had already excluded the fossil from the plant kingdom based on its lack of photosynthetic tissues. This new analysis confirms that it also lacks the essential traits of fungi, such as nutrient-absorbing filaments and carbon-processing networks. According to the research, the organism’s unique features, combined with the absence of any matching modern counterpart, place it firmly outside known classifications.
What makes this discovery so remarkable isn’t just the size or strangeness of Prototaxites, but what it reveals about life’s possibilities. The Devonian period was a time of experimentation, when evolution was trying out new forms and strategies. Prototaxites was one such experiment—an evolutionary branch that flourished for a time before vanishing forever. Its story is a reminder that the history of life is far richer and more surprising than we often imagine.
As the research team concluded, Prototaxites "belonged to a separate and now entirely extinct lineage of complex life." In solving one mystery, the scientists have opened the door to many more. What other lost lineages might be waiting to be discovered in the rocks beneath our feet? And what can these vanished giants teach us about the resilience—and fragility—of life on Earth?
The confirmation of Prototaxites as a unique form of life, neither plant nor fungus, marks a milestone in our understanding of Earth’s deep past. It’s a testament to the power of modern science—and to the enduring allure of the unknown.